PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027205-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 250aa    MW: 27753.9 Da    PI: 5.079
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027205-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-3081139259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  WALNUT_00027205-RA  81 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVVTYSCEHNHP 139
                         69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3176141IPR003657WRKY domain
SuperFamilySSF1182906.67E-2678141IPR003657WRKY domain
SMARTSM007743.6E-3580140IPR003657WRKY domain
PROSITE profilePS5081132.16881141IPR003657WRKY domain
PfamPF031068.7E-2682139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDGRFITSSF ISSSGQEENI DSTPENGAES PPSTIFDDMK ITSSVSSPRK SRRAIQKRVV  60
SVPIKDVEGS RLKGESNTPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER  120
SRVDPTMLVV TYSCEHNHPW PASRNHHSTN KPIKPETVAS AKPEPEEKFA DLGDESSLMA  180
SDEFSWFGDM ETTSSTVLES PIFAERISGD ADVAMFFPMR EEDESLYADL GELPECSVVF  240
RGVGPRLEIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-18811411574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025322.11e-114WRKY DNA-binding protein 65, putative
SwissprotQ9LP563e-92WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A0U1VMX91e-115A0A0U1VMX9_HEVBR; WRKY super family protein
STRINGVIT_10s0003g01600.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-93WRKY DNA-binding protein 65